HiC FFPE

Unlock the Potential of FFPE Samples
Detect structural variants in the genome using the Arima-HiC+ FFPE kit. With our robust and easy-to-use workflow, your formalin fixed paraffin embedded (FFPE) samples can yield critical genomic information — regardless of sample age.

• Proven Performance: Use Arima’s proven HiC+ technology to generate high-quality data from clinically relevant samples.

• Dependable Results: Generate data you can trust, with built-in QC steps to ensure you get reliable sequencing results every time

• Increased Discovery Power: Capture more data from FFPE samples to detect structural variants and their impacts on gene regulation

Benefits of Arima-HiC+ FFPE
The Arima-HiC+ FFPE Kit and workflow are ideal for the detection and discovery of structural variants from archival or clinical samples.

• - Detect both coding and non-coding structural variants

• - Link structural variants to impacts on gene function

• - Efficiently generate multiple data types from a single assay

Product Specifications

Sample Type:

• FFPE

Sample Input:

• 5 mm3 of tissue (~5 x 5µm FFPE tissue sections)​

Library Prep:

• Swift Biosciences Accel-NGS 2S Plus DNA Library Kit​

Sequencing Requirements:

• 2 x 150 paired-end reads from Illumina​

• A minimum of 100M reads for SV detection is recommended

Compatible Sequencer:

• Illumina sequencing platforms​

Bioinformatics:

• Arima-SV pipeline

Catalog #: A101060

Please email us at cs@medikonia.com for any enquiry. To place an order, please include the catalog number(s) of the product(s) in the email.

Product Flyer

Arima-HiC FFPE

Application Note

Structural Variant Detection with Hi-C Technology

User Guide

User Guide: Arima-HiC for Formalin Fixed Paraffin Embedded (FFPE) Tissues

QC Worksheet

Worksheet: Arima-HiC Quality Control For Structural Variants

Bioinformatics

Bioinformatics User Guide: Arima Structural Variant Pipeline